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BioC experimental data: CHECK report for frmaExampleData on moscato1

This page was generated on 2015-08-22 17:44:08 -0700 (Sat, 22 Aug 2015).

Package 92/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
frmaExampleData 1.5.0
Matthew N. McCall
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/frmaExampleData
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: frmaExampleData
Version: 1.5.0
Command: rm -rf frmaExampleData.buildbin-libdir frmaExampleData.Rcheck && mkdir frmaExampleData.buildbin-libdir frmaExampleData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frmaExampleData.buildbin-libdir frmaExampleData_1.5.0.tar.gz >frmaExampleData.Rcheck\00install.out 2>&1 && cp frmaExampleData.Rcheck\00install.out frmaExampleData-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=frmaExampleData.buildbin-libdir --install="check:frmaExampleData-install.out" --force-multiarch --no-vignettes --timings frmaExampleData_1.5.0.tar.gz
StartedAt: 2015-08-22 11:38:59 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 11:44:56 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 357.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: frmaExampleData.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   rm -rf frmaExampleData.buildbin-libdir frmaExampleData.Rcheck && mkdir frmaExampleData.buildbin-libdir frmaExampleData.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frmaExampleData.buildbin-libdir frmaExampleData_1.5.0.tar.gz >frmaExampleData.Rcheck\00install.out 2>&1 && cp frmaExampleData.Rcheck\00install.out frmaExampleData-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=frmaExampleData.buildbin-libdir --install="check:frmaExampleData-install.out" --force-multiarch --no-vignettes --timings frmaExampleData_1.5.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/frmaExampleData.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'frmaExampleData/DESCRIPTION' ... OK
* this is package 'frmaExampleData' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'frmaExampleData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 22.7Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                        old_size new_size compress
  AffyBatch133a.rda       10.8Mb    6.9Mb       xz
  AffyBatch133atag.rda     2.2Mb    891Kb       xz
  AffyBatch133plus2.rda    5.4Mb    1.8Mb       xz
  AffyBatchExample.rda     4.3Mb    2.3Mb       xz
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [3s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'D:/biocbld/bbs-3.2-data-experiment/meat/frmaExampleData.Rcheck/00check.log'
for details.


frmaExampleData.Rcheck/00install.out:


install for i386

* installing *source* package 'frmaExampleData' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'frmaExampleData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'frmaExampleData' as frmaExampleData_1.5.0.zip
* DONE (frmaExampleData)

frmaExampleData.Rcheck/examples_i386/frmaExampleData-Ex.timings:

nameusersystemelapsed
AffyBatch133a1.110.001.11
AffyBatch133atag0.330.000.33
AffyBatch133plus22.060.062.12
AffyBatchExample0.450.000.45

frmaExampleData.Rcheck/examples_x64/frmaExampleData-Ex.timings:

nameusersystemelapsed
AffyBatch133a0.830.000.82
AffyBatch133atag0.250.000.25
AffyBatch133plus21.310.011.34
AffyBatchExample0.310.000.32