dsQTL 0.7.1 VJ Carey
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015) | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/dsQTL | Last Changed Rev: 3333 / Revision: 3391 | Last Changed Date: 2015-06-24 13:32:45 -0700 (Wed, 24 Jun 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | | ![UNNEEDED, same version exists in internal repository UNNEEDED, same version exists in internal repository](../120px-Blue_Light_Icon.svg.png) |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf dsQTL.buildbin-libdir dsQTL.Rcheck && mkdir dsQTL.buildbin-libdir dsQTL.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=dsQTL.buildbin-libdir dsQTL_0.7.1.tar.gz >dsQTL.Rcheck\00install.out 2>&1 && cp dsQTL.Rcheck\00install.out dsQTL-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=dsQTL.buildbin-libdir --install="check:dsQTL-install.out" --force-multiarch --no-vignettes --timings dsQTL_0.7.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/dsQTL.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dsQTL/DESCRIPTION' ... OK
* this is package 'dsQTL' version '0.7.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dsQTL' can be installed ... OK
* checking installed package size ... NOTE
installed size is 945.5Mb
sub-directories of 1Mb or more:
data 931.7Mb
parts 13.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SE2ES: no visible global function definition for 'metadata'
getSNPlocs: no visible binding for global variable 'ch2locs'
getSNPlocs: no visible binding for global variable 'ch17locs'
* checking Rd files ... NOTE
prepare_Rd: dsQTL-package.Rd:60-61: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [22s] OK
** running examples for arch 'x64' ... [25s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/dsQTL.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'dsQTL' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
install for x64
* installing *source* package 'dsQTL' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'stats::IQR' when loading 'GGBase'
* MD5 sums
packaged installation of 'dsQTL' as dsQTL_0.7.1.zip
* DONE (dsQTL)