ontologyIndex: Reading Ontologies into R

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Version: 2.12
Depends: R (≥ 3.5.0)
Suggests: knitr, rmarkdown
Published: 2024-02-27
DOI: 10.32614/CRAN.package.ontologyIndex
Author: Daniel Greene
Maintainer: Daniel Greene <dg333 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: ontologyIndex citation info
Materials: NEWS
CRAN checks: ontologyIndex results


Reference manual: ontologyIndex.pdf
Vignettes: Introduction to ontologyX
Creating an ontology_index


Package source: ontologyIndex_2.12.tar.gz
Windows binaries: r-devel: ontologyIndex_2.12.zip, r-release: ontologyIndex_2.12.zip, r-oldrel: ontologyIndex_2.12.zip
macOS binaries: r-release (arm64): ontologyIndex_2.12.tgz, r-oldrel (arm64): ontologyIndex_2.12.tgz, r-release (x86_64): ontologyIndex_2.12.tgz, r-oldrel (x86_64): ontologyIndex_2.12.tgz
Old sources: ontologyIndex archive

Reverse dependencies:

Reverse depends: CardinalIO, ontoFAST, ontoProc
Reverse imports: BiocSet, famat, fobitools, gsEasy, immunotation, ontologyPlot, ontologySimilarity, ontophylo, rmzqc, scOntoMatch, SimReg, struct
Reverse suggests: bugsigdbr, scDiffCom


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