CRAN Package Check Results for Package pastis

Last updated on 2021-12-02 10:51:50 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-2 4.61 48.43 53.04 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-2 3.62 38.68 42.30 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-2 75.08 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-2 65.52 NOTE
r-devel-windows-x86_64-new-UL 0.1-2 11.00 115.00 126.00 NOTE
r-devel-windows-x86_64-new-TK 0.1-2 NOTE
r-devel-windows-x86_64-old 0.1-2 9.00 64.00 73.00 NOTE
r-patched-linux-x86_64 0.1-2 4.28 46.63 50.91 NOTE
r-patched-solaris-x86 0.1-2 101.60 NOTE
r-release-linux-x86_64 0.1-2 5.30 46.43 51.73 NOTE
r-release-macos-arm64 0.1-2 NOTE
r-release-macos-x86_64 0.1-2 NOTE
r-release-windows-ix86+x86_64 0.1-2 11.00 89.00 100.00 NOTE
r-oldrel-macos-x86_64 0.1-2 NOTE
r-oldrel-windows-ix86+x86_64 0.1-2 11.00 80.00 91.00 NOTE

Check Details

Version: 0.1-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'ape' 'caper'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-2
Check: R code for possible problems
Result: NOTE
    conch: no visible global function definition for 'read.tree'
    conch: no visible global function definition for 'reorder'
    conch: no visible global function definition for 'read.nexus'
    conch: no visible global function definition for '.compressTipLabel'
    conch: no visible global function definition for 'drop.tip'
    conch: no visible global function definition for 'extract.clade'
    conch: no visible global function definition for 'which.edge'
    conch: no visible global function definition for 'write.tree'
    pastis_main: no visible global function definition for 'combn'
    read_input: no visible global function definition for 'read.tree'
    read_input: no visible global function definition for 'reorder'
    read_input: no visible global function definition for 'read.csv'
    read_input: no visible global function definition for 'read.dna'
    Undefined global functions or variables:
     .compressTipLabel combn drop.tip extract.clade read.csv read.dna
     read.nexus read.tree reorder which.edge write.tree
    Consider adding
     importFrom("stats", "reorder")
     importFrom("utils", "combn", "read.csv")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'pastis_data_1' 'pastis_data_2' 'pastis_data_3'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64