CRAN Package Check Results for Package hmmm

Last updated on 2024-04-18 10:49:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-4 6.19 96.73 102.92 ERROR
r-devel-linux-x86_64-debian-gcc 1.0-4 4.70 75.33 80.03 ERROR
r-devel-linux-x86_64-fedora-clang 1.0-4 125.23 ERROR
r-devel-linux-x86_64-fedora-gcc 1.0-4 143.78 ERROR
r-prerel-macos-arm64 1.0-4 56.00 NOTE
r-prerel-windows-x86_64 1.0-4 5.00 120.00 125.00 ERROR
r-patched-linux-x86_64 1.0-4 7.74 97.07 104.81 ERROR
r-release-linux-x86_64 1.0-4 7.07 112.24 119.31 OK
r-release-macos-arm64 1.0-4 93.00 OK
r-release-macos-x86_64 1.0-4 124.00 OK
r-release-windows-x86_64 1.0-4 6.00 142.00 148.00 OK
r-oldrel-macos-arm64 1.0-4 79.00 OK
r-oldrel-windows-x86_64 1.0-4 8.00 144.00 152.00 OK

Check Details

Version: 1.0-4
Check: Rd files
Result: NOTE checkRd: (-1) hmmm.model.Rd:45: Lost braces; missing escapes or markup? 45 | with categories k_1, k_2, the joint frequencies y = {y_ij}, where i=1,...,k_1, j=1,...,k_2, | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-patched-linux-x86_64

Version: 1.0-4
Check: examples
Result: ERROR Running examples in ‘hmmm-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: anova.hidden > ### Title: anova for the class hidden > ### Aliases: anova.hidden > ### Keywords: package > > ### ** Examples > data(drinks) > y<-cbind(drinks$lemon.tea,drinks$orange.juice) > > f<-~lat*tea+lat*juice+tea*juice # lat indicates the latent variable > fm<-c("l-l-l") > fmargobs<-marg.list(fm,mflag="m") > Ptr<-matrix(c(0.941, 0.199, + 0.059, 0.801),2,2,byrow=TRUE) > Ptobs<-matrix(c(0.053, 0.215, 0.206, 0.001, 0.039, 0.021, 0.020, 0.176, 0.270, + 0.000, 0.000, 0.000, 0.048, 0.263, 0.360, 0.065, 0.053, 0.211) + ,2,9,byrow=TRUE) > > # saturated model (fsat<-~lat*tea*juice is implicit) > model.obsf<-hmmm.model(marg=fmargobs, + lev=c(2,3,3),names=c("lat","tea","juice")) > modelsat<-hidden.emfit(y,model.obsf,y.eps=0.01,maxit=10, + maxiter=2500,norm.diff.conv=0.001,old.tran.p=Ptr,bb=Ptobs) Error in while (((norm.diff > norm.diff.conv) || (norm.score > norm.score.conv)) & : missing value where TRUE/FALSE needed Calls: hidden.emfit -> hidden.emfit.S -> hmmm.mlfit -> mphineq.fit Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 1.0-4
Check: examples
Result: ERROR Running examples in ‘hmmm-Ex.R’ failed The error most likely occurred in: > ### Name: anova.hidden > ### Title: anova for the class hidden > ### Aliases: anova.hidden > ### Keywords: package > > ### ** Examples > data(drinks) > y<-cbind(drinks$lemon.tea,drinks$orange.juice) > > f<-~lat*tea+lat*juice+tea*juice # lat indicates the latent variable > fm<-c("l-l-l") > fmargobs<-marg.list(fm,mflag="m") > Ptr<-matrix(c(0.941, 0.199, + 0.059, 0.801),2,2,byrow=TRUE) > Ptobs<-matrix(c(0.053, 0.215, 0.206, 0.001, 0.039, 0.021, 0.020, 0.176, 0.270, + 0.000, 0.000, 0.000, 0.048, 0.263, 0.360, 0.065, 0.053, 0.211) + ,2,9,byrow=TRUE) > > # saturated model (fsat<-~lat*tea*juice is implicit) > model.obsf<-hmmm.model(marg=fmargobs, + lev=c(2,3,3),names=c("lat","tea","juice")) > modelsat<-hidden.emfit(y,model.obsf,y.eps=0.01,maxit=10, + maxiter=2500,norm.diff.conv=0.001,old.tran.p=Ptr,bb=Ptobs) Error in while (((norm.diff > norm.diff.conv) || (norm.score > norm.score.conv)) & : missing value where TRUE/FALSE needed Calls: hidden.emfit -> hidden.emfit.S -> hmmm.mlfit -> mphineq.fit Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-windows-x86_64