Last updated on 2023-05-30 11:00:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 12.21 | 161.04 | 173.25 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 10.89 | 122.32 | 133.21 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 216.38 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 235.76 | OK | |||
| r-devel-windows-x86_64 | 1.1.0 | 13.00 | 152.00 | 165.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.0 | 11.48 | 154.86 | 166.34 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 7.93 | 154.29 | 162.22 | OK | |
| r-release-macos-arm64 | 1.1.0 | 7.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.0 | 123.00 | ERROR | |||
| r-release-windows-x86_64 | 1.1.0 | 17.00 | 188.00 | 205.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.0 | 82.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 104.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 18.00 | 189.00 | 207.00 | NOTE |
Version: 1.1.0
Check: package dependencies
Result: NOTE
Imports includes 32 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
doc 2.3Mb
extdata 3.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘GENIE3’
Package suggested but not available for checking: ‘org.Mm.eg.db’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavor: r-release-macos-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘bulkAnalyseR-Ex.R’ failed
The error most likely occurred in:
> ### Name: DEanalysis
> ### Title: Perform differential expression (DE) analysis on an expression
> ### matrix
> ### Aliases: DEanalysis DEanalysis_edger DEanalysis_deseq2
>
> ### ** Examples
>
> expression.matrix.preproc <- as.matrix(read.csv(
+ system.file("extdata", "expression_matrix_preprocessed.csv", package = "bulkAnalyseR"),
+ row.names = 1
+ ))[1:100, 1:4]
>
> anno <- AnnotationDbi::select(
+ getExportedValue('org.Mm.eg.db', 'org.Mm.eg.db'),
+ keys = rownames(expression.matrix.preproc),
+ keytype = 'ENSEMBL',
+ columns = 'SYMBOL'
+ ) %>%
+ dplyr::distinct(ENSEMBL, .keep_all = TRUE) %>%
+ dplyr::mutate(NAME = ifelse(is.na(SYMBOL), ENSEMBL, SYMBOL))
Warning: replacing previous import ‘utils::findMatches’ by ‘S4Vectors::findMatches’ when loading ‘AnnotationDbi’
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'select': there is no package called ‘org.Mm.eg.db’
Calls: %>% ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-release-macos-x86_64