18#ifndef __PILEUP_ELEMENT_BASE_QUAL_H__
19#define __PILEUP_ELEMENT_BASE_QUAL_H__
22#include "PileupElement.h"
41 virtual void reset(int32_t refPosition);
44 static const char UNSET_QUAL = 0xFF;
This class inherits from the base class and stores base and qualities.
virtual void reset(int32_t refPosition)
Resets the entry, setting the new position associated with this element.
virtual void analyze()
Perform the analysis associated with this class.
virtual void addEntry(SamRecord &record)
Add an entry to this pileup element.
This is a base class pileup component, representing the information for one reference position.
Class providing an easy to use interface to get/set/operate on the fields in a SAM/BAM record.