Definition at line 23 of file PedigreeAlleles.h.
◆ Alleles()
◆ AddAllele()
bool Alleles::AddAllele |
( |
char |
allele | ) |
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inline |
Definition at line 158 of file PedigreeAlleles.h.
159 {
160 if (one == allele || two == allele)
161 return true;
162
163 if (one != 0 && two != 0)
164 return false;
165
166 if (one == 0) one = allele;
167 else two = allele;
168 return true;
169 }
◆ BinaryCoded()
longint Alleles::BinaryCoded |
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inline |
Definition at line 119 of file PedigreeAlleles.h.
120 {
121 if (isKnown())
122 {
123 longint allele1(1);
124 longint allele2(1);
125
126 allele1 <<= one - 1;
127 allele2 <<= two - 1;
128
129 return allele1 | allele2;
130 }
131 else
132 return NOTZERO;
133 }
◆ countAlleles()
int Alleles::countAlleles |
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int |
a | ) |
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inline |
Definition at line 68 of file PedigreeAlleles.h.
69 {
70 return ((one == a) ? 1 : 0) + ((two == a) ? 1 : 0);
71 }
◆ countIBS()
int Alleles::countIBS |
( |
Alleles & |
al | ) |
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inline |
Definition at line 87 of file PedigreeAlleles.h.
88 {
89 return (one == al.one) ?
90 ((two == al.two) ? 2 : 1) :
91 ((one == al.two) ?
92 ((two == al.one) ? 2 : 1) :
93 (((two == al.one) || (two == al.two)) ? 1 : 0));
94 }
◆ hasAllele()
bool Alleles::hasAllele |
( |
int |
a | ) |
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inline |
◆ Hi()
◆ identicalTo()
int Alleles::identicalTo |
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Alleles & |
al | ) |
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inline |
Definition at line 80 of file PedigreeAlleles.h.
81 {
82 return ((al.one == one) && (al.two == two)) ||
83 ((al.two == one) && (al.one == two));
84 }
◆ Intersect() [1/2]
void Alleles::Intersect |
( |
Alleles & |
geno | ) |
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inline |
Definition at line 135 of file PedigreeAlleles.h.
136 {
137 char a1 = Lo(), a2 = Hi();
138 char b1 = geno.Lo(), b2 = geno.Hi();
139
140 if (a1 == b1 && a2 == b2)
141 return;
142 if (a1 == b1 || a1 == b2)
143 one = two = a1;
144 else if (a2 == b1 || a2 == b2)
145 one = two = a2;
146 else
147 one = two = 0;
148 }
◆ Intersect() [2/2]
void Alleles::Intersect |
( |
char |
allele | ) |
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inline |
Definition at line 150 of file PedigreeAlleles.h.
151 {
152 if (one != allele && two != allele)
153 one = two = 0;
154 else
155 one = two = allele;
156 }
◆ isHeterozygous()
bool Alleles::isHeterozygous |
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inline |
Definition at line 44 of file PedigreeAlleles.h.
45 {
46 return isKnown() && (one != two);
47 }
◆ isHeterozygousFor()
bool Alleles::isHeterozygousFor |
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int |
a | ) |
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inline |
Definition at line 58 of file PedigreeAlleles.h.
59 {
60 return isHeterozygous() && hasAllele(a);
61 }
◆ isHomozygous()
bool Alleles::isHomozygous |
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inline |
Definition at line 48 of file PedigreeAlleles.h.
49 {
50 return isKnown() && (one == two);
51 }
◆ isHomozygousFor()
bool Alleles::isHomozygousFor |
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int |
a | ) |
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inline |
◆ isKnown()
bool Alleles::isKnown |
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| ) |
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inline |
◆ Lo()
◆ operator!=()
int Alleles::operator!= |
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Alleles & |
rhs | ) |
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inline |
◆ operator==()
int Alleles::operator== |
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Alleles & |
rhs | ) |
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inline |
◆ operator[]()
char & Alleles::operator[] |
( |
int |
i | ) |
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inline |
◆ otherAllele()
int Alleles::otherAllele |
( |
int |
a | ) |
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inline |
◆ SequenceCoded()
int Alleles::SequenceCoded |
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inline |
Definition at line 114 of file PedigreeAlleles.h.
115 {
116 return isKnown() ? Hi() *(Hi() - 1) / 2 + Lo() : 0;
117 }
◆ Wipe()
◆ one
◆ two
The documentation for this class was generated from the following file: