libStatGen Software 1
TestPileup.h
1/*
2 * Copyright (C) 2011 Regents of the University of Michigan
3 *
4 * This program is free software: you can redistribute it and/or modify
5 * it under the terms of the GNU General Public License as published by
6 * the Free Software Foundation, either version 3 of the License, or
7 * (at your option) any later version.
8 *
9 * This program is distributed in the hope that it will be useful,
10 * but WITHOUT ANY WARRANTY; without even the implied warranty of
11 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 * GNU General Public License for more details.
13 *
14 * You should have received a copy of the GNU General Public License
15 * along with this program. If not, see <http://www.gnu.org/licenses/>.
16 */
17
18#include "Pileup.h"
19#include "PileupElementBaseQual.h"
20
21void testPileup();
22
24{
25public:
26 // Overwrite to validate result.
27 virtual void analyze();
28
29};
30
31
32class TestPileup : public Pileup<TestPileupElement>
33{
34public:
35 void testPileupPosition();
36private:
37};
This class inherits from the base class and stores base and qualities.
Class to perform a pileup of all reads by position, assuming the reads are coordinate sorted.
Definition: Pileup.h:59
virtual void analyze()
Perform the analysis associated with this class.
Definition: TestPileup.cpp:25