BEDMatrix: Extract Genotypes from a PLINK .bed File

A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.

Version: 2.0.4
Depends: R (≥ 3.4.0)
Imports: methods, crochet (≥ 2.3.0)
Suggests: data.table, LinkedMatrix, tinytest
Published: 2024-09-06
DOI: 10.32614/CRAN.package.BEDMatrix
Author: Alexander Grueneberg [aut, cre], Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <cran at agrueneberg.info>
BugReports: https://github.com/QuantGen/BEDMatrix/issues
License: MIT + file LICENSE
URL: https://github.com/QuantGen/BEDMatrix
NeedsCompilation: yes
Citation: BEDMatrix citation info
Materials: README NEWS
CRAN checks: BEDMatrix results

Documentation:

Reference manual: BEDMatrix.pdf

Downloads:

Package source: BEDMatrix_2.0.4.tar.gz
Windows binaries: r-devel: BEDMatrix_2.0.4.zip, r-release: BEDMatrix_2.0.4.zip, r-oldrel: BEDMatrix_2.0.4.zip
macOS binaries: r-release (arm64): BEDMatrix_2.0.4.tgz, r-oldrel (arm64): BEDMatrix_2.0.4.tgz, r-release (x86_64): BEDMatrix_2.0.4.tgz, r-oldrel (x86_64): BEDMatrix_2.0.4.tgz
Old sources: BEDMatrix archive

Reverse dependencies:

Reverse depends: BGData, EBPRS
Reverse imports: jackstraw, mrMLM, phers
Reverse suggests: gcatest, genio, groupedSurv, lfa, popkin, simtrait, symDMatrix

Linking:

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