--- a/mk +++ b/mk @@ -5,17 +5,14 @@ ObjNames='aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln rm -f *.o muscle.make.stdout.txt muscle.make.stderr.txt for CPPName in $CPPNames do - echo $CPPName >> /dev/tty - g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt + echo "${CXX} ${CXXFLAGS} -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o" + ${CXX} ${CXXFLAGS} -c -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 $CPPName.cpp -o $CPPName.o done LINK_OPTS= if [ `uname -s` == Linux ] ; then LINK_OPTS=-static fi -g++ $LINK_OPTS $ENV_LINK_OPTS -g -o muscle $ObjNames >> muscle.make.stdout.txt 2>> muscle.make.stderr.txt -tail muscle.make.stderr.txt -strip muscle -ls -lh muscle -sum muscle +echo "${CXX} ${LDFLAGS} -o muscle $ObjNames" +${CXX} ${LDFLAGS} -o muscle $ObjNames