* using log directory 'd:/Rcompile/CRANpkg/local/4.5/evoTS.Rcheck' * using R Under development (unstable) (2024-06-17 r86768 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'evoTS/DESCRIPTION' ... OK * this is package 'evoTS' version '1.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'evoTS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [5s] ERROR Running examples in 'evoTS-Ex.R' failed The error most likely occurred in: > ### Name: fit.mode.shift > ### Title: Fit two models to two separate segments to an evolutionary > ### sequence (time-series). > ### Aliases: fit.mode.shift > > ### ** Examples > > > ##Generate a paleoTS object. > x <- paleoTS::sim.GRW(30) > > ## Fit a mode-shift model without defining a shift point (the example may take > 5 seconds to run) > fit.mode.shift(x, model1="URW", model2="Stasis") [1] "Searching all possible shift points in the evolutionary sequence" Total # hypotheses: 17 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 paleoTSfit object [n = 30 , K = 5 ] Model: URW-Stasis Method: Joint log-likelihood = -16.367 AICc = 45.23401 Parameter estimates: anc vstep theta omega shift1 0.24174626 0.05502436 1.13780580 1.17188788 24.00000000 Error in if (nsh == 1) shn <- "shift" else shn <- paste0("shift", 1:nsh) : argument is of length zero Calls: -> print.paleoTSfit -> showGG Execution halted * checking PDF version of manual ... [23s] OK * checking HTML version of manual ... [8s] OK * DONE Status: 1 ERROR