ccTutorial 1.7.0
Joern Toedling
| Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial | | Last Changed Rev: 3281 / Revision: 3391 | | Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf ccTutorial.buildbin-libdir ccTutorial.Rcheck && mkdir ccTutorial.buildbin-libdir ccTutorial.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ccTutorial.buildbin-libdir ccTutorial_1.7.0.tar.gz >ccTutorial.Rcheck\00install.out 2>&1 && cp ccTutorial.Rcheck\00install.out ccTutorial-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ccTutorial.buildbin-libdir --install="check:ccTutorial-install.out" --force-multiarch --no-vignettes --timings ccTutorial_1.7.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/ccTutorial.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ccTutorial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccTutorial' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ccTutorial' can be installed ... OK
* checking installed package size ... NOTE
installed size is 790.3Mb
sub-directories of 1Mb or more:
PairData 448.5Mb
data 77.8Mb
doc 5.3Mb
exonerateData 202.3Mb
expression 49.9Mb
vignettes 6.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'Ringo' 'affy' 'topGO'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [36s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
X 19.8 0.14 19.94
** running examples for arch 'x64' ... [38s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
X 20.02 0.17 20.19
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/ccTutorial.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'ccTutorial' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import by 'graph::.__C__dist' when loading 'topGO'
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by 'graph::.__C__dist' when loading 'topGO'
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
install for x64
* installing *source* package 'ccTutorial' ...
** testing if installed package can be loaded
Warning: replacing previous import by 'graph::.__C__dist' when loading 'topGO'
groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'ccTutorial' as ccTutorial_1.7.0.zip
* DONE (ccTutorial)